Genome Synteny Analyzer


Multi-genome synteny and gene cross-match analyzer

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Genes from up to 20 genomes can (currently) be compared one against each other:
1) Select appropriate genomes
2) Start analysis to perform cross-match computation (using DIAMOND B. Buchfink et al., Nature Methods 12, 59-60 (2015);
and build link relations on all genes
3) Choose gene(s) of interest in the subsequently generated list and display gene's environements in their respective genomes
* as a bonus, display scatter plots on chosen chromosome pairs.
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Complete Genomes DataBase selection

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Genome list last revision on 2017/08/01:13:17:46
Full Phylogenetic Domain selection: Select full phylogenetic domains or open genomes window to make custom selection

 ALL       BACTERIA                ARCHAEA                    EUKARYA            THERMOPHILES      
Taxonomy Name selection: Type valid taxonomy name - Suggested names appear as you type

Matches only full names
(Names for lineages are from NCBI Taxonomy data)
Taxa Tree selection: Browse taxonomy trees . Click on items to open/close nodes or open lineage selections

(Lineage data for tree construction is from NCBI Taxonomy data)

Tree Help
Expand Bacteria tree   Expand Archaea tree Expand Eukarya tree Expand Thermophiles tree


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